PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 117aa    MW: 13200.6 Da    PI: 8.6259
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28002genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.47.4e-31297191
                     DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81
                               +C++C+vlr++C++dC+l+ ++     p++q++++ +v k+FG++++l++l+++p+++r+++++sl+yeA  r+ +Pv+Gavg+++
  Tp57577_TGAC_v2_mRNA28002  2 SCNGCRVLRKGCSEDCMLRDCLtwiqnPQAQANATVFVTKFFGRATLLSFLSSVPPNQRPAMFQSLMYEAVGRTINPVNGAVGMLW 87
                               6************************************************************************************* PP

                     DUF260 82 klqqqleqlk 91
                               ++++q +q  
  Tp57577_TGAC_v2_mRNA28002 88 TGKWQFCQXX 97
                               *******976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.5311107IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-27297IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEDCMLR DCLTWIQNPQ AQANATVFVT KFFGRATLLS FLSSVPPNQR  60
PAMFQSLMYE AVGRTINPVN GAVGMLWTGK WQFCQXXXXX XXXXXXXXXX XXXXEW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592478.12e-61LOB domain protein
SwissprotQ9FN118e-50LBD37_ARATH; LOB domain-containing protein 37
TrEMBLG7IE592e-61G7IE59_MEDTR; LOB domain protein
STRINGGLYMA10G40421.15e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-51LOB domain-containing protein 37