PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27852
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 207aa    MW: 22099.2 Da    PI: 8.804
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27852genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260112.43.1e-3524111187
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                +C aCk+lrrkC+++C++apyf +e+ + +fa+vhk+FGasnv+kll  +p ++r da+ sl+yeA+ar+rdP+yG+vg+i++l
  Tp57577_TGAC_v2_mRNA27852  24 PCGACKFLRRKCVSGCIFAPYFDSEHgTTHFAAVHKVFGASNVSKLLLGIPINRRLDAAVSLCYEAQARLRDPIYGCVGHIFAL 107
                                7*********************999979******************************************************** PP

                     DUF260  84 qqql 87 
                                qqq 
  Tp57577_TGAC_v2_mRNA27852 108 QQQC 111
                                **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.67623124IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-3524111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSLNSSGSGS NGGGSGSGGN SSSPCGACKF LRRKCVSGCI FAPYFDSEHG TTHFAAVHKV  60
FGASNVSKLL LGIPINRRLD AAVSLCYEAQ ARLRDPIYGC VGHIFALQQQ CFCGIQKRNK  120
KEGLGKDEKK KVLSLQAELS YMQSHINSSE LTQPPLPPPQ AAVAPAVFSF ADLPPPXXXX  180
FIGYATPEAQ YRPTSIFTCS WPNINH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623721.18e-65LOB domain protein
SwissprotO813222e-52LBD31_ARATH; LOB domain-containing protein 31
SwissprotO221314e-52LBD18_ARATH; LOB domain-containing protein 18
TrEMBLG7L0958e-65G7L095_MEDTR; LOB domain protein
STRINGBRADI1G68170.12e-57(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.13e-52LOB domain-containing protein 18