PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27847
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 195aa    MW: 21779.7 Da    PI: 8.2936
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27847genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.37.9e-36111131100
                     DUF260   1 aCaaCkvlrrkCakd.Cvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                +C aCk+lrrkC+k+ C++apyf ++   +++fa+vhk+FGasn  kll ++p ++r da+ +l+yeA ara dPvyG+v++i+
  Tp57577_TGAC_v2_mRNA27847  11 PCGACKFLRRKCVKGcCIFAPYFESSGqgSAHFAAVHKVFGASNAAKLLMRIPVHKRLDAVVTLCYEALARATDPVYGCVAHIF 94 
                                7*************9789*****7744257****************************************************** PP

                     DUF260  82 klqqqleqlkaelallkee 100
                                +lqqq+ +l+aela+++++
  Tp57577_TGAC_v2_mRNA27847  95 ALQQQVVELQAELAYVQAR 113
                                ***************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.10910114IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3511111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDLRYGGRDG PCGACKFLRR KCVKGCCIFA PYFESSGQGS AHFAAVHKVF GASNAAKLLM  60
RIPVHKRLDA VVTLCYEALA RATDPVYGCV AHIFALQQQV VELQAELAYV QARLSILKNR  120
ISQEPQFQQP QNSSISPTMH SSSLHHLSSN NETSYMSMQN HHPIPFELSN FHNNPSYYSY  180
HQQLNDQELQ PNLP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623743.11e-108LOB domain protein
SwissprotO813227e-54LBD31_ARATH; LOB domain-containing protein 31
TrEMBLG7L0B71e-108G7L0B7_MEDTR; LOB domain protein
STRINGGLYMA01G34523.18e-64(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.15e-46LOB domain-containing protein 19