PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27806
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 529aa    MW: 58115.8 Da    PI: 6.868
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27806genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-17170219155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Tp57577_TGAC_v2_mRNA27806 170 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 219
                                78*******************......55************************997 PP

2AP243.76.8e-14262312155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Tp57577_TGAC_v2_mRNA27806 262 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 312
                                89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-16170228IPR016177DNA-binding domain
PfamPF008476.2E-9170219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-17171227IPR001471AP2/ERF domain
PROSITE profilePS5103217.596171227IPR001471AP2/ERF domain
CDDcd000183.85E-11171228No hitNo description
SMARTSM003807.9E-32171233IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-17262322IPR016177DNA-binding domain
CDDcd000187.38E-25262322No hitNo description
PfamPF008471.4E-9262312IPR001471AP2/ERF domain
PROSITE profilePS5103215.461263320IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-16263320IPR001471AP2/ERF domain
SMARTSM003803.1E-31263326IPR001471AP2/ERF domain
PRINTSPR003675.1E-6264275IPR001471AP2/ERF domain
PRINTSPR003675.1E-6302322IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MWDLNDSPDQ RKNYESEAEG CSIDGDEVDE KGKRVGSISN ISNSSSSAVV IEDGSEEEDD  60
GNGNGNGNRL LKKKGSKIFG FSVDDDDDDS ECPPVTRQFF PVEDTEMTAV VDSTSGGGSS  120
GGGGSSSFPR AHWVGVRFCQ SETVNGGKLI ENSASQPSKK SRRGPRSRSS QYRGVTFYRR  180
TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIED YEEDLKQMSN  240
LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEIEAA  300
RAYDKAAIKC NGKEAVTNFD PSIYDNELNS ESSGTATANH NLDLSLGSSS SKGSNNQAFG  360
NHNTNAATDQ YMAPESNWRN GGIRPKPVNI LPKPCGMSNM EAYVRDGYGE NEALRMLSQT  420
HLQSPVTNEM HRYGPYRSPV EHHHPQMLRS FQHLHPSNFH VSSSSSNGGR IGSDLTLSMS  480
DQQKWQTGPP HLLATAAASS GFPPQIRPST SSQGWLQKNG FHTLMRPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611692.10.0AP2 domain transcription factor
SwissprotP479271e-133AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLG7K5B30.0G7K5B3_MEDTR; AP2 domain transcription factor
STRINGGLYMA01G39520.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-111AP2 family protein