PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 664aa    MW: 74757.8 Da    PI: 9.6026
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27570genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.5e-32476529255
                    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Tp57577_TGAC_v2_mRNA27570 476 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 529
                                9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.66E-15473529IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-28474529IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23476529IPR006447Myb domain, plants
PfamPF002491.4E-6477528IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MVVGSAFENE EDAMIRRKPQ VRRRKGQEKW DLHRTLASFL VGGSLASLSK ILALFYFFSS  60
FFSHYFWVRS SDKPPFKRVI IVSHSRELEY FIKLFKYFSL GEHSSLLYKT PKTPQSDHES  120
NTCGNDQHND VRSQLYIFIQ RRHCAQEHFL ACEYCTLISF FLFFLVYFNK RKKKKSYIFC  180
NHQGRKLFLK KMPLEGIFIE ATSTPPDLSL HISPPSTSSL ICNNNSTHQL LNYDAHNSSS  240
TNFISSRTLA QTQAQTQAHT ELSLGRNFSG GVGXXXXXXX XXXXXXQQPH NPYFPHLQHH  300
HNSTTSTTTP ISTSPNSSHM NHINYGVSLL DMSSSSSEAL RPIKGIPVYH NRSFPFLPAM  360
EHSREKDPKM CLYHHMPNSP TPSPSSSSSP LSPYITPGGL DPMSFLNSSG SAAAYRAAVA  420
TRFNNEPFKS HQYPLHHHHH HHHSHYGSVG LGASEASMMR SRFLPKLPTK RSMRAPRMRW  480
TSTLHARFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQMYRTV KTTDKPAASS  540
GFSDGSGEDD VPQIGSNGGI RQFSDQRGLT DRPLQQDMDY SSTTTLWSNS SSSREPWPPT  600
SSNDVDGFRP TIFQSQPISG GHQIQECDSN QLKNNLSGSN LECKNPSLEF TLGIPDWNGK  660
GQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16477531458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16477531458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16477531458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16477531458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16477531458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16477531458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16477531458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16477531458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:11395775, ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:14561401, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928, ECO:0000269|PubMed:18849474, ECO:0000269|PubMed:20179097}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27570
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269|PubMed:18849474}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1474720.0AC147472.18 Medicago truncatula clone mth2-24n18, complete sequence.
GenBankCR9403060.0CR940306.3 M.truncatula DNA sequence from clone MTH2-10B11 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600664.20.0transcription repressor KAN1 isoform X1
SwissprotQ93WJ99e-77KAN1_ARATH; Transcription repressor KAN1
TrEMBLG7J8N80.0G7J8N8_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES709150.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17563391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.11e-61G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang T,Kerstetter RA,Irish VF
    APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis.
    J. Exp. Bot., 2014. 65(4): p. 1181-91
    [PMID:24449383]
  3. Mach J
    Getting in Shape? Leaves work it out with KANADI1.
    Plant Cell, 2014. 26(1): p. 4
    [PMID:24464293]
  4. Jun SE, et al.
    Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12.
    Mol. Cells, 2015. 38(3): p. 243-50
    [PMID:25518926]
  5. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  6. Xie Y, et al.
    Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways.
    Plant Physiol., 2015. 169(2): p. 1240-53
    [PMID:26246448]
  7. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  8. Singh A, et al.
    Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 3408
    [PMID:28611467]
  9. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]
  10. Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F
    Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers.
    Development, 2018.
    [PMID:29361563]