PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27308
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 314aa    MW: 36199.1 Da    PI: 8.3871
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27308genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.18.6e-171351543
                               SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                     SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                                +  rq tf  R+ng++KK +ELS+LCd++v+vi+++++
  Tp57577_TGAC_v2_mRNA27308 13 KEKSRQKTFLTRKNGLMKKVKELSTLCDVDVCVILYAPN 51
                               567899******************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.002161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-20290IPR002100Transcription factor, MADS-box
CDDcd002664.13E-21278No hitNo description
PRINTSPR004045.6E-11323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-161251IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRGRISMKL VQKEKSRQKT FLTRKNGLMK KVKELSTLCD VDVCVILYAP NFQGQGFVEP  60
ETWPKDPSEV QSVLQKYYNT TNDRRLRIYD IQEYFKGKMK KVESEIFNVH KKMLKVMYPT  120
WNESFNSFGE EQLRLFASML DSKLDACNQR MNMLKGDHNG KAITESHKVD KLPNSNTPYL  180
TSNPSSYFNL MQNNFSIISD KNPFEFWPLE LGQMSSQPSS MFSGAQGSYQ LQSYPYSHVD  240
ANWAHQVGAN VTYDPKIDTK MKDGAENAEN LSSYYYNGNT PAMQSYHHNA MQTLPFDQNL  300
PNLMDFNLMD FMI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516685.11e-137MADS-box transcription factor 20-like
TrEMBLA0A2K3PIC60.0A0A2K3PIC6_TRIPR; MADS-box transcription factor
STRINGXP_004516685.11e-137(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.16e-25M-type_MADS family protein