PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26966
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family CPP
Protein Properties Length: 598aa    MW: 66851.4 Da    PI: 6.0094
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26966genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.71.3e-14441479341
                        TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                                +++C+Ckks+Clk+YCeCfaag++C   C+C dC+Nk +
  Tp57577_TGAC_v2_mRNA26966 441 CRSCKCKKSRCLKNYCECFAAGAYCIGPCSCIDCSNKGD 479
                                789*********************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.3E-13439480IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163411.816440490IPR005172CRC domain
PfamPF036382.0E-10442477IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MDAIENKNAP VSNLQKEDDS LFDYLNILSP LKTKTRVEAT LTLNSLGMDY SLLASKPKVS  60
SEDVNKIYRH EEALTDSTHG CQYSLGPSSQ HKKIELPQSM QYSPYSSEQR PLISTEEANW  120
ALELLGMQVP NGTNVQDDSM KDSVECGTYI PEVGSVQANI EGADCDSNHL SSITQLMNLP  180
PQSNTSSNYK MQNVEHVASS SKHEIEYNPS EPIAATDINQ TPNNLANVAL MDSNPIARGI  240
DELASIKRSI TRSCLNYQPE MTSLQMNAIN EKPLLHRKNT SYSQMCVLPR NDIYLNEKMS  300
SGRKPESPSC TSSLHLSARQ GHHLSPVPAP MERHLVPSEN DDFTKSSVHI PGEDFCRSTP  360
DLMSRVQFND LTNKLLDENM KMTSKVHSKD SIGLISSGSE HEMEEESVDF CQNIPKRKRK  420
TNTNVQFFRK RSNLTREGGA CRSCKCKKSR CLKNYCECFA AGAYCIGPCS CIDCSNKGDN  480
EDTVLQARRN NDSKVVTSAN SSPQFEIFLF QGSTKEKKFL ISGSLNFCKR YVFNVYVLSS  540
CVLMMLFFYS YPDFELLNHV SLFVQNTIGR IMLDIDMDIA LPAQLDTAPI EFYVIYG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26966
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630895.11e-141protein tesmin/TSO1-like CXC 2
TrEMBLA0A2K3LQK30.0A0A2K3LQK3_TRIPR; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2056123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-11Tesmin/TSO1-like CXC domain-containing protein