PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25919
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 236aa    MW: 26872.7 Da    PI: 5.9702
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25919genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-125798146
                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46
                               + y+GVr +    +Wv+e r+p   +k+++++lg+f tae+Aa+a+
  Tp57577_TGAC_v2_mRNA25919 57 PVYRGVRKRN-LDKWVCEMREP---NKKTKIWLGTFPTAEMAARAH 98
                               68*****888.8******9998...347****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-95798IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-1458122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-2258123IPR001471AP2/ERF domain
SMARTSM003801.0E-1158127IPR001471AP2/ERF domain
PROSITE profilePS5103216.37158121IPR001471AP2/ERF domain
PRINTSPR003677.7E-85970IPR001471AP2/ERF domain
CDDcd000187.07E-1959123No hitNo description
PRINTSPR003677.7E-88197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MFNTNNTFSS HPSTSDTSLP NSEGSYGTLV TNDEVRLAVS TPKKRAGRKK FKETRHPVYR  60
GVRKRNLDKW VCEMREPNKK TKIWLGTFPT AEMAARAHXX XXXXXXXXXX XXGRYACLNF  120
ADSAWRLPKP ATTQAKDIQK AAALAAEAFR PDKTLKTNDI EMDVITNNIE MDVGSSATEE  180
QSMVCMEEHE EGVMNMPEYF RDMALMSPTY SFGYHGYEDI HVEDFQDEEV SLWNF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25919
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9972005e-75KC997200.1 Medicago truncatula genotype F83005-5 C-repeat binding factor 14 (CBF14) gene, complete cds.
GenBankKC9972015e-75KC997201.1 Medicago truncatula genotype DZA045-5 C-repeat binding factor 14-like (CBF14) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452572.21e-104dehydration-responsive element-binding protein 1E
RefseqXP_013452583.11e-105dehydration-responsive element-binding protein 1A
RefseqXP_024641369.11e-104dehydration-responsive element-binding protein 1E
RefseqXP_024641370.11e-104dehydration-responsive element-binding protein 1E
RefseqXP_024641371.11e-104dehydration-responsive element-binding protein 1E
RefseqXP_024641372.11e-104dehydration-responsive element-binding protein 1E
TrEMBLA0A2Z6PQ111e-132A0A2Z6PQ11_TRISU; Uncharacterized protein
STRINGGLYMA09G27180.21e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.14e-54dehydration response element B1A