PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25913
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 184aa    MW: 21038.9 Da    PI: 10.6613
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25913genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-1680130155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                + y+GVr +    +Wv+e r+p   +k+++++lg+f tae+Aa+a++ a+++l+g
  Tp57577_TGAC_v2_mRNA25913  80 PVYRGVRKRN-LDKWVCEMREP---NKKTKIWLGTFPTAEMAARAHDVAALALRG 130
                                68*****888.8******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-1280130IPR001471AP2/ERF domain
SMARTSM003801.9E-2681144IPR001471AP2/ERF domain
PROSITE profilePS5103221.1881138IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2181140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-3081140IPR001471AP2/ERF domain
CDDcd000181.11E-2882140No hitNo description
PRINTSPR003675.3E-88293IPR001471AP2/ERF domain
PRINTSPR003675.3E-8104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MFFLYITHHT LDSLNTNQLN LQHIHMFTTN NSSNSPPSSV PSSSYEGSHG MLVSNEEMRL  60
AESCPKKRAG RKKFKETRHP VYRGVRKRNL DKWVCEMREP NKKTKIWLGT FPTAEMAARA  120
HDVAALALRG RYACLNFADS VWKLPKPATT QTKXXXXXXX XXXXXXXXXX LHKPLKHSDQ  180
TKI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25913
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9972131e-101KC997213.1 Medicago truncatula genotype F83005-5 C-repeat binding factor 2a (CBF2_a) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452572.21e-73dehydration-responsive element-binding protein 1E
RefseqXP_024641369.11e-73dehydration-responsive element-binding protein 1E
RefseqXP_024641370.11e-73dehydration-responsive element-binding protein 1E
RefseqXP_024641371.11e-73dehydration-responsive element-binding protein 1E
RefseqXP_024641372.11e-73dehydration-responsive element-binding protein 1E
SwissprotQ9FJ933e-51DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2K3PLE12e-89A0A2K3PLE1_TRIPR; Dehydration-responsive element-binding protein 1c-like
STRINGGLYMA09G27180.21e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-42C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]