PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25714
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 366aa    MW: 41796.2 Da    PI: 6.1226
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25714genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.68.4e-1045114155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse....ng.....kr.krfsl....gkfgtaeeAakaaiaarkkleg 55 
                                s y+GV++++++gr++A+++d  ++    n+      + k+f++    g ++ +e Aa a++ a++k++g
  Tp57577_TGAC_v2_mRNA25714  45 SIYRGVTRHRWTGRYEAHLWDkNCWnesqNKkgrqvFCiKQFHVveisGAYDNEETAAHAYDLAALKYWG 114
                                57*******************999977644488776448****988889*******************98 PP

2AP2513.5e-16157208155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Tp57577_TGAC_v2_mRNA25714 157 SKYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 208
                                89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-645114IPR001471AP2/ERF domain
CDDcd000181.77E-1445124No hitNo description
SuperFamilySSF541711.7E-1145124IPR016177DNA-binding domain
PROSITE profilePS5103216.54246122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1046123IPR001471AP2/ERF domain
SMARTSM003801.9E-1646128IPR001471AP2/ERF domain
PRINTSPR003671.9E-54758IPR001471AP2/ERF domain
PRINTSPR003671.9E-5104124IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18157218IPR016177DNA-binding domain
PfamPF008473.5E-12157208IPR001471AP2/ERF domain
CDDcd000182.45E-24157218No hitNo description
Gene3DG3DSA:3.30.730.106.9E-18158217IPR001471AP2/ERF domain
SMARTSM003807.6E-25158222IPR001471AP2/ERF domain
PROSITE profilePS5103218.334158216IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAKKSQKQIE KDNDNNNLNA SNTVTTKAKR TRKSVPRTSP PQRSSIYRGV TRHRWTGRYE  60
AHLWDKNCWN ESQNKKGRQV FCIKQFHVVE ISGAYDNEET AAHAYDLAAL KYWGQDTIIN  120
FPLSNYQKEL IDMESQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGKVFG  180
NKYLYLGTYA TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKWLKPNNNN NNDNNKSNIN  240
LSDINSNYST NDQNSNEELE ISILDNETLS LNNSIDEATL VQPRPTSATS ALELLLQSSK  300
FKEMVEMASM TSNVSTTLES DQLSQCSFPD DIQTYFEYED FNDGTMLDDL NSIVPMFHFE  360
GAEIL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267840.0AC126784.11 Medicago truncatula chromosome 8 clone mth2-36b12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610261.20.0AP2-like ethylene-responsive transcription factor
SwissprotQ94AN41e-105AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLG7JFH50.0G7JFH5_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGGLYMA02G36880.21e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.19e-94ARIA-interacting double AP2 domain protein