PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25558
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 141aa    MW: 15703.2 Da    PI: 6.8062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25558genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.1e-202172256
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                               +y+G+r+++ +g+++AeIrdp+     +r++lg+f+taeeAa+a++aa+  ++g+
  Tp57577_TGAC_v2_mRNA25558 21 KYRGIRRRP-WGKFAAEIRDPTRK--GTRIWLGTFDTAEEAARAYDAAAFHFRGH 72
                               8********.**********8542..4***********************99996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-142172IPR001471AP2/ERF domain
PROSITE profilePS5103225.5282179IPR001471AP2/ERF domain
SMARTSM003801.1E-362185IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-242180IPR016177DNA-binding domain
CDDcd000186.97E-192180No hitNo description
Gene3DG3DSA:3.30.730.103.9E-332181IPR001471AP2/ERF domain
PRINTSPR003674.5E-122233IPR001471AP2/ERF domain
PRINTSPR003674.5E-124561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEGNRSISNS TNGNGNVDQI KYRGIRRRPW GKFAAEIRDP TRKGTRIWLG TFDTAEEAAR  60
AYDAAAFHFR GHRAILNFPN EYQAPSNSSS SSSLPMPLTS MPPPNPSSSS SYSVDDINFE  120
FEFFDNKLLQ ELLQDGTHNN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-302112814114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25558
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0514492e-97BT051449.1 Medicago truncatula clone MTYF1_F2_F3_F41G-L-18 unknown mRNA.
GenBankBT1453982e-97BT145398.1 Medicago truncatula clone JCVI-FLMt-16L17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495105.11e-61ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2K3L1N39e-69A0A2K3L1N3_TRIPR; Ethylene-responsive transcription factor erf098-like protein
STRINGXP_004495105.14e-61(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]