PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24733
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 122aa    MW: 13855.2 Da    PI: 11.0448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24733genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.6e-1667108146
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 
                                s y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a+
  Tp57577_TGAC_v2_mRNA24733  67 SVYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAH 108
                                78*****998.**********843...6****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-2267108No hitNo description
SuperFamilySSF541712.68E-1667111IPR016177DNA-binding domain
PfamPF008472.4E-1067108IPR001471AP2/ERF domain
PROSITE profilePS5103217.02968108IPR001471AP2/ERF domain
SMARTSM003809.4E-1568114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2368110IPR001471AP2/ERF domain
PRINTSPR003674.6E-116980IPR001471AP2/ERF domain
PRINTSPR003674.6E-1191107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MILILLLLSP FSTHLIVYTL IICYLKKKKN TMVNNNTSSL SSPSSPPQSL TCSSEEEKRG  60
KKRDNKSVYR GVRMRTWGKW VSEIREPRKK SRIWLGTFAT AEMAARAHXX XXTTITITTT  120
F*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24733
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161494.13e-25hypothetical protein PHAVU_001G073800g
SwissprotQ9LYD36e-24DREB3_ARATH; Dehydration-responsive element-binding protein 3
SwissprotQ9M0805e-24ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A2K3NIP63e-32A0A2K3NIP6_TRIPR; Dehydration-responsive element-binding protein 3-like
STRINGXP_007161494.11e-24(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.15e-19ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]