PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 301aa    MW: 33364.6 Da    PI: 4.7661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23820genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.2e-143069245
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45
                               +y GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a
  Tp57577_TGAC_v2_mRNA23820 30 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALA 69
                               588******.**********965...5**************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.2430113IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-143072IPR016177DNA-binding domain
SMARTSM003809.9E-2030119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-193069IPR001471AP2/ERF domain
CDDcd000186.19E-1730112No hitNo description
PRINTSPR003671.2E-83142IPR001471AP2/ERF domain
PfamPF008478.4E-83169IPR001471AP2/ERF domain
PRINTSPR003671.2E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSPLKGKKKQ TTGTTSETTT QEQQTAWGGR YLGVRRRPWG RYAAEIRDPS TKERHWLGTF  60
DTAEEAALAX XXXXXXXXXX XXXXXXXXXX XXXXXXDRAA RGMRGSRART NFVYADTPPG  120
SSVTPILSPD QQQQQQPQTF HDLSFVLQPD PVPCLDPVSI ITSSVNYGYN EENINYLNKY  180
NHSPQVPLPT LEASINNGNS YFNLGSNSTT SSVELPPLPP DITSSTCYDQ GNYGFNGGDH  240
DHDHDNGYYY SSSWEQNMDC YNNNQMFGTN MGGAESNNTT TLAGSVNGST FDFGSSSFFF  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1426112162ATERF1
3gcc_A1e-1426112162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23820
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449469.15e-97ethylene-responsive transcription factor LEP
TrEMBLA0A2K3N8861e-168A0A2K3N886_TRIPR; Ethylene-responsive transcription factor lep-like protein
STRINGXP_004493337.17e-86(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-30ERF family protein