PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2376
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 284aa    MW: 30693.1 Da    PI: 6.3636
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2376genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.22.3e-32101021100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrrkC+++C +apyf  e+p++fanvh++FGasnv kllk+l+ ++reda++        r++dPvyG+vg+i+ lqq
  Tp57577_TGAC_v2_mRNA2376  10 PCAACKYLRRKCTQECDFAPYFLPESPQRFANVHRVFGASNVAKLLKELNATDREDAAE-------SRIKDPVYGCVGLISMLQQ 87 
                               7*******************************************************965.......5****************** PP

                    DUF260  86 qleqlkaelallkee 100
                               +l++ ++el+++k+e
  Tp57577_TGAC_v2_mRNA2376  88 RLKEIQHELHAAKKE 102
                               ***********9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.1839103IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-3210100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
LIQMSSSNSP CAACKYLRRK CTQECDFAPY FLPESPQRFA NVHRVFGASN VAKLLKELNA  60
TDREDAAESR IKDPVYGCVG LISMLQQRLK EIQHELHAAK KELSSYNLNP QTMQYLLAHP  120
GTVIMPQQQQ QWNNAQFAGF ANNFPPEIAG GGGIVIRDGQ QQQQDQEFME AHQLLAAQQQ  180
YMLRYGGGHQ MGGAAVSDVA DGGQSLGMGN FDNGAGGGGG GAVGYYQIQQ QGGGEQQQQN  240
YHHHNVSVPA AHGNPIEAQL LLSPQNQETG EDGKSVGSTH HSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459745.11e-112LOB domain protein
TrEMBLA0A072UWH31e-112A0A072UWH3_MEDTR; LOB domain protein
STRINGGLYMA11G06210.21e-55(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-50ASYMMETRIC LEAVES 2-like 1