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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA22521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 627aa MW: 72405 Da PI: 8.583 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.4e-18 | 502 | 552 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+ ae Aa a+++ + kl+ge Tp57577_TGAC_v2_mRNA22521 502 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDNAENAAMAYDREAFKLRGE 552 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03398 | 2.2E-46 | 15 | 176 | IPR005061 | Vacuolar protein sorting-associated protein Ist1 |
CDD | cd00018 | 2.46E-31 | 501 | 561 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.4E-31 | 502 | 560 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-38 | 502 | 565 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 502 | 560 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.537 | 502 | 559 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-11 | 503 | 552 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 503 | 514 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 525 | 541 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0015031 | Biological Process | protein transport | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MFGISFGWTK ASKLKKAIKT ARCRLMHLKN KRQTIAMHLR NDLANLILNS HQDIALKRVE 60 QLIQDERLIA AYELLDHFFE FILKQLSYIR KHKDCPTDIN EAISSVIFAS SRCRNFPELF 120 PIRKLFAQRY GNDFVTAAVE LLPGNLVNTK LQECFSVKFV SDDLKYRVVE EISKMHSPSK 180 IDQGLVDYVD DIDECEYFSS KDSCSQDQRL VLFNSSESEM SQDESSTESS IRSSSYALQK 240 RASKKRLRRR TSPLLERKGI VEIGYTLHYQ TPSPQSNYPK KRLKQNSNSD SCQSQLEDSE 300 RDSLDFHMSE CSCNLDSPCY CFVYNEIEMF EYQGTSSSTN VLSPKTCDCL TTTPFLRALS 360 TMPSKWLENY TDNLLRTFSS PSQRPKHSCN KFRLMVTSYW TSQQEWSKTR SNYSWDSLNI 420 FNYGTGSWSD QLVEGTVSCK VLNIQYHSHT NQEQQIFCLL FLHLFTQHHP YQLLILXXXX 480 XXXXQNKQLL RPQARPLNAG KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDNAENAAM 540 AYDREAFKLR GENAKLNFPE LFLNKDKPPT SSSSSTIAQT SSAPALHESS SSTSTKFQNT 600 NQPESIHDEP NLLVFQYIDI IFTVTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 500 | 559 | 3 | 63 | ATERF1 |
3gcc_A | 8e-22 | 500 | 559 | 3 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 278 | 284 | PKKRLKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA22521 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003605735.2 | 0.0 | uncharacterized protein LOC11439370 | ||||
TrEMBL | G7JSJ0 | 0.0 | G7JSJ0_MEDTR; Regulator of Vps4 activity in the MVB pathway protein | ||||
STRING | AES87932 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 2e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA22521 |