PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22521
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 627aa    MW: 72405 Da    PI: 8.583
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22521genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.4e-18502552256
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ ae Aa a+++ + kl+ge
  Tp57577_TGAC_v2_mRNA22521 502 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDNAENAAMAYDREAFKLRGE 552
                                59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF033982.2E-4615176IPR005061Vacuolar protein sorting-associated protein Ist1
CDDcd000182.46E-31501561No hitNo description
Gene3DG3DSA:3.30.730.107.4E-31502560IPR001471AP2/ERF domain
SMARTSM003804.3E-38502565IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21502560IPR016177DNA-binding domain
PROSITE profilePS5103222.537502559IPR001471AP2/ERF domain
PfamPF008472.6E-11503552IPR001471AP2/ERF domain
PRINTSPR003671.5E-9503514IPR001471AP2/ERF domain
PRINTSPR003671.5E-9525541IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015031Biological Processprotein transport
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MFGISFGWTK ASKLKKAIKT ARCRLMHLKN KRQTIAMHLR NDLANLILNS HQDIALKRVE  60
QLIQDERLIA AYELLDHFFE FILKQLSYIR KHKDCPTDIN EAISSVIFAS SRCRNFPELF  120
PIRKLFAQRY GNDFVTAAVE LLPGNLVNTK LQECFSVKFV SDDLKYRVVE EISKMHSPSK  180
IDQGLVDYVD DIDECEYFSS KDSCSQDQRL VLFNSSESEM SQDESSTESS IRSSSYALQK  240
RASKKRLRRR TSPLLERKGI VEIGYTLHYQ TPSPQSNYPK KRLKQNSNSD SCQSQLEDSE  300
RDSLDFHMSE CSCNLDSPCY CFVYNEIEMF EYQGTSSSTN VLSPKTCDCL TTTPFLRALS  360
TMPSKWLENY TDNLLRTFSS PSQRPKHSCN KFRLMVTSYW TSQQEWSKTR SNYSWDSLNI  420
FNYGTGSWSD QLVEGTVSCK VLNIQYHSHT NQEQQIFCLL FLHLFTQHHP YQLLILXXXX  480
XXXXQNKQLL RPQARPLNAG KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDNAENAAM  540
AYDREAFKLR GENAKLNFPE LFLNKDKPPT SSSSSTIAQT SSAPALHESS SSTSTKFQNT  600
NQPESIHDEP NLLVFQYIDI IFTVTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-22500559363ATERF1
3gcc_A8e-22500559363ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278284PKKRLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22521
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003605735.20.0uncharacterized protein LOC11439370
TrEMBLG7JSJ00.0G7JSJ0_MEDTR; Regulator of Vps4 activity in the MVB pathway protein
STRINGAES879320.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-39ERF family protein