PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22479
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 134aa    MW: 14219.5 Da    PI: 8.8287
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22479genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.31.2e-3824111187
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                +C aCk+lrrkC ++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++l
  Tp57577_TGAC_v2_mRNA22479  24 PCGACKFLRRKCIPGCIFAPYFDSEQgASHFAAVHKVFGASNVSKLLQNVPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFTL 107
                                7***********************9989******************************************************** PP

                     DUF260  84 qqql 87 
                                qqq+
  Tp57577_TGAC_v2_mRNA22479 108 QQQV 111
                                **98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.52523125IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3824111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MSINSSCSGS GCGGSGGSGG TCGPCGACKF LRRKCIPGCI FAPYFDSEQG ASHFAAVHKV  60
FGASNVSKLL QNVPVHKRLD AVVTICYEAQ ARLRDPVYGC VAHIFTLQQQ VISIIITIFI  120
RFSLYTHLGI NKF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445014.12e-62LOB domain protein
SwissprotO221312e-52LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A072TNF82e-62A0A072TNF8_MEDTR; LOB domain protein
STRINGGLYMA01G34540.12e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-52LOB domain-containing protein 18