PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22319
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 510aa    MW: 55767.8 Da    PI: 5.5643
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22319genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11320362754
                                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Tp57577_TGAC_v2_mRNA22319 320 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 362
                                79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.593313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16316381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9319362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.31E-13320366No hitNo description
Gene3DG3DSA:4.10.280.108.4E-16320375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.53E-6437497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MISRMNSNNG WVEEREDENT TNPNTPSSAS PFISNNSQDF SAFIKPMLQI NDEDAEWYIR  60
DMAFSPNLDN VLLQTVDSVS SSSCSPSSSV FNSLDPSAPS PSNLQYFLPP NPKPINTNTF  120
SSLLNNNPFE IPCELGGFLD HQVSMLPGCS SFMGSFDFTS KNQLPATSAT NQLSLPQLPQ  180
INNGFNGFMG FQNSQEGSGK SLFLNRSKIL RPLDSLPSSG TQPTLFQKRA ALRKNLGKCE  240
MGGGSDKKRK MSGGDEFDDL SFDGSGLNYD SDDLTESNNF GKIDEIDGKN CGNGSNGNIT  300
VTGGVDHKGK KKGIPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIEYLK  360
ELLQRINDLH NELESTPAGS SLTPVSSFHP LTPTPSSLPS RIKEELCPSS LPSPNGQPAT  420
QPARIEVRLR EGRAVNIHMF CPRKPGLLLS TMKALDNLGL DIQQAVISCF NGFAMDIFRA  480
EQCKEGQDVL PEQIKAVLLD LAGLMEWPN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309327KKKGIPAKNLMAERRRRKK
2321328ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461649.10.0BHLH transcriptional factor
SwissprotQ9LSE21e-129ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A072V0Y60.0A0A072V0Y6_MEDTR; BHLH transcriptional factor
STRINGPOPTR_0012s10780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-120bHLH family protein