PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21717
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 402aa    MW: 45309.7 Da    PI: 9.3733
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21717genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026200222123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++Cg  Fs+   L  H+r+H
  Tp57577_TGAC_v2_mRNA21717 200 HECSICGAEFSSGQALGGHMRRH 222
                                78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.14116138IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-10116140IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159116143IPR007087Zinc finger, C2H2
SuperFamilySSF576679.45E-8116138No hitNo description
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576679.45E-8195222No hitNo description
PfamPF139121.1E-12199223IPR007087Zinc finger, C2H2
SMARTSM003550.01200222IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743200222IPR007087Zinc finger, C2H2
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MLVSKDQQQI IKGKRTKRQR LPSPLRLAMP GVSNNSYNEG TSYNDNMYKE NSKGIEFVKI  60
ESCNRSEEEK EEEDMANCLI LLAQGHNRHH DHQNQEHVSN HHDYNNNKSS SNFYFYECKT  120
CNRCFPSFQA LGGHRASHSK PNKANCNNIV TQQKQEVTTS PFVDDHYDPT MNTILSLQAF  180
TAATPITTIT TTATKKSKVH ECSICGAEFS SGQALGGHMR RHRTLVSTST MTTTTTTTPS  240
VSLSIGSRSP KSXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXGHMRRHRT LVSTSTMTTT TTTTPSVSLS IGSRSPKSHE AKKPRINYGL  360
KLDLNLPAPE VDQRDQSKFS FQQPRENVIA FSNSSLVDCH Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21717
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468116.11e-105zinc finger protein ZAT5
TrEMBLA0A2K3P2Z61e-151A0A2K3P2Z6_TRIPR; Zinc finger protein ZAT5-like
STRINGXP_004515927.19e-75(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-34C2H2 family protein