PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2122
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 467aa    MW: 49727.8 Da    PI: 7.0957
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2122genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.31.1e-41123231389
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                               + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s
  Tp57577_TGAC_v2_mRNA2122 123 PPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLS 207
                               5699****************************************************************99988888888888444 PP

                       TCP  87 sg.....................k 89 
                               ++                     +
  Tp57577_TGAC_v2_mRNA2122 208 APpsksaphsfhsalalahhpyeE 231
                               444444444444444444444321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-39127270IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496128182IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MELSSDLQQN NNKKQQKRGT TTHPHHQQQE SLSPPPSNSH SQQHQQHHLV VPFDGRPSPF  60
IMGSISTNNT NSSPSNSSSS SASASAIDAS LAIATRSEPH SNNNNQIQQF SSSTTTAVAV  120
ANPPKRSTKD RHTKVDGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII  180
AATGTGTIPA NFSTLNVSLR SSGSTLSAPP SKSAPHSFHS ALALAHHPYE EAAYQHAPLL  240
GFHPHQQLMN ADQIGEALSN ENYMRKRYRE DLFKDDNNNQ NNETGDADGS SSPKGFKXXX  300
XXXXXXXXXX XXXXNNETGD GDGSSSPKGF KTNHQQDGTM GEQGEGGGGG ASSSSSSASS  360
AGNSISGLLR PPSNMLPATA MWATAGSGNT IWMVPVTGGG GATANSETVQ TQNMWPFSTH  420
LNNQQSSQQQ GTPSSQLHFM PRFNVPTGNS GGSDGVEFEA YWIGSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2122
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462384.11e-180transcription factor TCP8 isoform X2
RefseqXP_024632177.11e-180transcription factor TCP8 isoform X2
TrEMBLA0A2K3LW450.0A0A2K3LW45_TRIPR; Uncharacterized protein
STRINGAES632141e-179(Medicago truncatula)
STRINGAES632531e-179(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-56TCP family protein