PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20924
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 186aa    MW: 20480.2 Da    PI: 6.7707
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20924genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-173383155
                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Tp57577_TGAC_v2_mRNA20924 33 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPAPEMAAKAYDVAAYCLKG 83
                               68*****887.**********843...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-113383IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-213493IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-303492IPR001471AP2/ERF domain
SMARTSM003801.4E-333497IPR001471AP2/ERF domain
PROSITE profilePS5103222.9063491IPR001471AP2/ERF domain
CDDcd000189.97E-303592No hitNo description
PRINTSPR003677.1E-123546IPR001471AP2/ERF domain
PRINTSPR003677.1E-127393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEQNLKDDVA VKTVTTENSA EKTGKVRCGT RHPVYHGVRK RRWGKWVSEI REPRKKSRIW  60
LGSFPAPEMA AKAYDVAAYC LKGRKAQLNF PDEVHRLPLL PPPSSCTARD IQTAAAEAAN  120
MMMVKDVASP ENSSIDSGSG GSDDFWGEIE LPELVNGTWW SYSVDVAVVS PEIEIPTQQS  180
FTACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-172895876Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20924
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510664.11e-100ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI23e-54ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A2Z6MY461e-113A0A2Z6MY46_TRISU; Uncharacterized protein
STRINGXP_004510664.11e-99(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-51ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]