PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA20431
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 224aa    MW: 25750.2 Da    PI: 6.154
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA20431genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.41.7e-33121591128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........................kvkaeeke 57 
                                lppGfrF+Ptdeelvv++L++k++  +++  +vi+++++y+++Pw+L+                            ++  e ++
  Tp57577_TGAC_v2_mRNA20431  12 LPPGFRFDPTDEELVVHFLQRKATLLPCHP-HVIPDLHLYSYDPWQLHGilvytiyylfvfflavdysgrsaivvgRALLEGNK 94 
                                79*************************999.89**************9558999999999999999888877765533347889 PP

                        NAM  58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                                wy++s+r         +nr+t++gyWkatg +++v+++ ++++vg+kk +vf+ g +  +g kt+W+m+e+ l
  Tp57577_TGAC_v2_mRNA20431  95 WYYYSRRT--------QNRVTDNGYWKATGMEEAVICStNNKKVGMKKHFVFHVGeSPASGIKTNWIMQEFCL 159
                                99999874........589************999998868899**********883556899*********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-38957IPR003441NAC domain
PROSITE profilePS5100540.7712191IPR003441NAC domain
PfamPF023654.2E-2213158IPR003441NAC domain
SuperFamilySSF1019417.06E-3885191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGDKNDIYNV NLPPGFRFDP TDEELVVHFL QRKATLLPCH PHVIPDLHLY SYDPWQLHGI  60
LVYTIYYLFV FFLAVDYSGR SAIVVGRALL EGNKWYYYSR RTQNRVTDNG YWKATGMEEA  120
VICSTNNKKV GMKKHFVFHV GESPASGIKT NWIMQEFCLS DSASSSAKSS KRKSKPIKDY  180
SKWVICRVYE QNEDGDDGMD QLSYLDEVFL SLDDLDEISL PNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-31319211169NAC domain-containing protein 19
3swm_B5e-31319211169NAC domain-containing protein 19
3swm_C5e-31319211169NAC domain-containing protein 19
3swm_D5e-31319211169NAC domain-containing protein 19
3swp_A5e-31319211169NAC domain-containing protein 19
3swp_B5e-31319211169NAC domain-containing protein 19
3swp_C5e-31319211169NAC domain-containing protein 19
3swp_D5e-31319211169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA20431
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019440373.11e-98PREDICTED: NAC domain-containing protein 104-like
RefseqXP_019440374.11e-98PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK64e-70NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2K3LLY11e-126A0A2K3LLY1_TRIPR; NAC domain-containing protein
STRINGGLYMA08G19300.11e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-69xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]