PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19794
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 205aa    MW: 23233.1 Da    PI: 8.7899
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19794genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18112162255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrdps+ g   r++lg+f+ + +Aaka++ a+ +++g
  Tp57577_TGAC_v2_mRNA19794 112 RYRGVRRRP-WGKFAAEIRDPSKKG--SRVWLGTFDCEIDAAKAYDSAAFRMRG 162
                                7********.**********97744..**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-21112172IPR016177DNA-binding domain
PROSITE profilePS5103223.96112170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-31112171IPR001471AP2/ERF domain
SMARTSM003805.0E-35112176IPR001471AP2/ERF domain
PfamPF008475.9E-13112162IPR001471AP2/ERF domain
PRINTSPR003672.6E-13113124IPR001471AP2/ERF domain
CDDcd000181.01E-22120170No hitNo description
PRINTSPR003672.6E-13152172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTTAKETSNL DLIRHHLLGD NISVKLENPS PEFDLYSYIS ENTNFFTFLE GYDLVADMEF  60
FGNTSQTETK PSKEIKKTNS PEPKPKLEPI STTMVSSKKI KKEEEFVDET RRYRGVRRRP  120
WGKFAAEIRD PSKKGSRVWL GTFDCEIDAA KAYDSAAFRM RGQKAILNFP LEAGECDPKP  180
NSCGRKRRRE SDQVEASRSS TSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-28111171464ATERF1
3gcc_A3e-28111171464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184188RKRRR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19794
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0526811e-130BT052681.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-N-16 unknown mRNA.
GenBankBT1340771e-130BT134077.1 Medicago truncatula clone JCVI-FLMt-11I4 unknown mRNA.
GenBankBT1399001e-130BT139900.1 Medicago truncatula clone JCVI-FLMt-11G6 unknown mRNA.
GenBankCU6823491e-130CU682349.14 M.truncatula DNA sequence from clone MTH2-90A5 on chromosome 1, complete sequence.
GenBankJF3579241e-130JF357924.1 Medicago truncatula ethylene response factor (SERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589850.21e-103ethylene-responsive transcription factor ERF107
SwissprotQ404781e-38ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLA0A2K3LCA61e-116A0A2K3LCA6_TRIPR; Ethylene-responsive transcription factor erf106-like protein
STRINGAES601011e-101(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-32ERF family protein