PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA19716
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 233aa    MW: 25502.1 Da    PI: 10.1542
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA19716genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.5e-1763113155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                + y+GVr++  +g+WvAeIr+p   + r  r +lg+f  a +Aa a+++a+++++g
  Tp57577_TGAC_v2_mRNA19716  63 CNYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFPNAVGAALAYDEAARAMYG 113
                                56*****999.**********8...2.359***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.55E-3063123No hitNo description
PfamPF008475.5E-1163113IPR001471AP2/ERF domain
SMARTSM003809.8E-3664127IPR001471AP2/ERF domain
PROSITE profilePS5103221.48364121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-3164122IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-2064121IPR016177DNA-binding domain
PRINTSPR003671.9E-116576IPR001471AP2/ERF domain
PRINTSPR003671.9E-11103123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLVKSQNKGD GSKSLADTLA KWKEYNARLE SSGEAAKPVR KVPAKGSRKG CMKGKGGPEN  60
SRCNYRGVRQ RTWGKWVAEI REPNRGNRLW LGTFPNAVGA ALAYDEAARA MYGASARLNF  120
PNVEVSNFSN LESLKDCVDQ SGFVKTALEN TESKISPDNA CVDAAEDVDM KHLSLSLSVT  180
VNHEEKRGAM PLKGRTKLLY KPLFSSLTRV PEPPYARSLK LELRFGCALG HI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1664121260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-1664121563ATERF1
3gcc_A2e-1664121563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:12609047}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA19716
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013441464.11e-103dehydration-responsive element-binding protein 2A
RefseqXP_024629841.11e-103dehydration-responsive element-binding protein 2A
RefseqXP_024629842.11e-103dehydration-responsive element-binding protein 2A
RefseqXP_024629844.11e-103dehydration-responsive element-binding protein 2A
RefseqXP_024629845.11e-103dehydration-responsive element-binding protein 2A
RefseqXP_024629846.11e-103dehydration-responsive element-binding protein 2A
SwissprotA2WL196e-50DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
SwissprotQ0JQF78e-50DRE2A_ORYSJ; Dehydration-responsive element-binding protein 2A
TrEMBLA0A2K3LKJ61e-135A0A2K3LKJ6_TRIPR; Dehydration-responsive element-binding protein 2a-like
STRINGXP_004513549.11e-100(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.11e-50ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sun SJ, et al.
    Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice.
    J. Exp. Bot., 2010. 61(10): p. 2807-18
    [PMID:20460361]
  3. Mallikarjuna G,Mallikarjuna K,Reddy MK,Kaul T
    Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.).
    Biotechnol. Lett., 2011. 33(8): p. 1689-97
    [PMID:21528404]
  4. Cui M, et al.
    Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice.
    Plant Physiol. Biochem., 2011. 49(12): p. 1384-91
    [PMID:22078375]
  5. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  6. Li X, et al.
    LcSAIN1, a novel salt-induced gene from sheepgrass, confers salt stress tolerance in transgenic Arabidopsis and rice.
    Plant Cell Physiol., 2013. 54(7): p. 1172-85
    [PMID:23695503]
  7. Schmidt R, et al.
    Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice.
    Plant Cell, 2013. 25(6): p. 2115-31
    [PMID:23800963]
  8. Huang YC,Huang WL,Hong CY,Lur HS,Chang MC
    Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance.
    Rice (N Y), 2012. 5(1): p. 33
    [PMID:24279948]
  9. Zhang XX, et al.
    OsDREB2A, a rice transcription factor, significantly affects salt tolerance in transgenic soybean.
    PLoS ONE, 2013. 8(12): p. e83011
    [PMID:24376625]
  10. Wang ST, et al.
    MicroRNA319 positively regulates cold tolerance by targeting OsPCF6 and OsTCP21 in rice (Oryza sativa L.).
    PLoS ONE, 2014. 9(3): p. e91357
    [PMID:24667308]
  11. Ma T, et al.
    LcWRKY5: an unknown function gene from sheepgrass improves drought tolerance in transgenic Arabidopsis.
    Plant Cell Rep., 2014. 33(9): p. 1507-18
    [PMID:24913125]
  12. Zhao J, et al.
    Global transcriptional profiling of a cold-tolerant rice variety under moderate cold stress reveals different cold stress response mechanisms.
    Physiol Plant, 2015. 154(3): p. 381-94
    [PMID:25263631]
  13. Chen M,Zhao Y,Zhuo C,Lu S,Guo Z
    Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
    Plant Biotechnol. J., 2015. 13(4): p. 482-91
    [PMID:25283804]
  14. Gao Y, et al.
    A maize phytochrome-interacting factor 3 improves drought and salt stress tolerance in rice.
    Plant Mol. Biol., 2015. 87(4-5): p. 413-28
    [PMID:25636202]
  15. Cai W, et al.
    Overexpression of Rat Neurons Nitric Oxide Synthase in Rice Enhances Drought and Salt Tolerance.
    PLoS ONE, 2015. 10(6): p. e0131599
    [PMID:26121399]
  16. Sakuraba Y, et al.
    Rice ONAC106 Inhibits Leaf Senescence and Increases Salt Tolerance and Tiller Angle.
    Plant Cell Physiol., 2015. 56(12): p. 2325-39
    [PMID:26443376]
  17. Sato H, et al.
    The Arabidopsis transcriptional regulator DPB3-1 enhances heat stress tolerance without growth retardation in rice.
    Plant Biotechnol. J., 2016. 14(8): p. 1756-67
    [PMID:26841113]
  18. Yu Y, et al.
    Transgenic rice expressing a cassava (Manihot esculenta Crantz) plasma membrane gene MePMP3-2 exhibits enhanced tolerance to salt and drought stresses.
    Genet. Mol. Res., 2016.
    [PMID:26909954]