PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18707
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 213aa    MW: 23043.9 Da    PI: 7.7717
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18707genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-1885135155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta +Aa a+++a+++++g
  Tp57577_TGAC_v2_mRNA18707  85 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAIGAAFAYDEAARAMYG 135
                                56*****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1185135IPR001471AP2/ERF domain
CDDcd000189.55E-3185145No hitNo description
SMARTSM003808.3E-3686149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3186144IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2086143IPR016177DNA-binding domain
PROSITE profilePS5103221.58886143IPR001471AP2/ERF domain
PRINTSPR003675.3E-98798IPR001471AP2/ERF domain
PRINTSPR003675.3E-9109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKGFSVLFWF IVVSATCVEL HMLAKTCEKG DGSKSLGKIL ARWREYNAQL EASCNDGDKP  60
VRKVAAKGSK KGCMKGKGGP ENSRCNYRGV RQRTWGKWVA EIREPNRGSR LWLGTFPTAI  120
GAAFAYDEAA RAMYGSCARL NFPNVSVPRF SEESSNDSPD ANHSGSSMTV LTNTESMIIP  180
NNSGIGGDDD TDMELVSLSV SVKQENEEGE SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1886143260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18707
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597059.27e-99putative dehydration-responsive element-binding protein 2H
RefseqXP_004487357.19e-99putative dehydration-responsive element-binding protein 2H
RefseqXP_004487359.19e-99putative dehydration-responsive element-binding protein 2H
RefseqXP_024633319.17e-99putative dehydration-responsive element-binding protein 2H
RefseqXP_027188126.19e-99putative dehydration-responsive element-binding protein 2H
RefseqXP_027188127.19e-99putative dehydration-responsive element-binding protein 2H
SwissprotQ8LFR23e-48DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
SwissprotQ9SIZ03e-48DRE2H_ARATH; Putative dehydration-responsive element-binding protein 2H
TrEMBLA0A2K3MYD91e-137A0A2K3MYD9_TRIPR; Dehydration-responsive element-binding protein 2c-like
STRINGAES673101e-100(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-41DRE-binding protein 2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]