PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18074
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 457aa    MW: 50510.2 Da    PI: 5.4747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18074genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.2e-12269311754
                                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  Av+Y+k+L
  Tp57577_TGAC_v2_mRNA18074 269 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAVDYLKEL 311
                                79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.593262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16265331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9268311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.00E-13269315No hitNo description
Gene3DG3DSA:4.10.280.103.4E-15269324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.13E-7384445No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDRYTLPLPT PPPQGGVHNT LTIPSWSEPQ QQESPSSWST PNSEPKHNTN NTEQDNIAIA  60
IAMGASATSL PFFKPEPQPE PDNFYNNNSN NNVVNVINNV PFVSNPTTIT DNFLMHQNTN  120
TLDSNPHSFF HNNNNYFFNN NNNNNNNPFE MGFENGFFMG NNITSNSPVF MGGSLELSSA  180
SEFPPSLELD ASIPRLETVG NKKKRKVEKK WEEEGSGGGD VDGDIDDFSG LNYDSDENGN  240
DLNNSNGTVV TGGDQKGKKK KGLPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI  300
LGDAVDYLKE LLQRINNLHN ELESTPPGSL LQPSASASFH PLTPTPPTLP CRVKEDLYPG  360
DLLSPKNQSP KVEVRVREGR AVNIHMFCTR RPGLLLSTMR ALDNLGLDVQ QAVISCFNGF  420
ALDVFRAEQQ CREGQDVLPE QIKAVLLDSA GYHGLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206KKKRKV
2258276KKKGLPAKNLMAERRRRKK
3270277ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1362460.0BT136246.1 Medicago truncatula clone JCVI-FLMt-19P18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449463.10.0basic helix loop helix protein BHLH23
SwissprotQ9LSE21e-114ICE1_ARATH; Transcription factor ICE1
TrEMBLQ2HUL60.0Q2HUL6_MEDTR; Basic helix loop helix protein BHLH23
STRINGGLYMA16G05390.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-105bHLH family protein