PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA18035
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 231aa    MW: 24602.2 Da    PI: 4.8129
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA18035genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-174599155
                        AP2  1 sgykGVrwdkkrgr...WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               +g+ GVr++ +r r   Wv+eIr+p++   +kr++lg++ tae+Aa+a++ a+++l+g
  Tp57577_TGAC_v2_mRNA18035 45 TGVLGVRYRGTRCRsgkWVSEIREPRK---TKRIWLGTYPTAEMAAAAYDVAALALKG 99
                               57889999998888888*******843...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.27146107IPR001471AP2/ERF domain
PfamPF008476.2E-114699IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-2651109IPR001471AP2/ERF domain
SMARTSM003806.5E-2751113IPR001471AP2/ERF domain
CDDcd000187.92E-1751109No hitNo description
SuperFamilySSF541711.31E-1852109IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDGNNNNNNN VSAVPPAPPP IQIPNAVTSS STSAPTTPSS PATTTGVLGV RYRGTRCRSG  60
KWVSEIREPR KTKRIWLGTY PTAEMAAAAY DVAALALKGP ETTLNFPDSI PSYPIPASLS  120
STDIRAAAEA AAQTRIIKPM ISPKQEQQQQ QQQNPSSSGF EGSSSSAAAS GVPQEYIDED  180
ELLNMPNLLD EMAIGMQVSP PRMSSFSNYS SDDSPRNSDH GGDNLWSYHF *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA18035
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2025161e-94AC202516.13 Medicago truncatula clone mth2-67c18, complete sequence.
GenBankAC2120121e-94AC212012.3 Medicago truncatula clone mth2-65h3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496613.11e-75ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ905e-45ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2K3NI091e-103A0A2K3NI09_TRIPR; Ethylene-responsive transcription factor erf025-like protein
STRINGAES625684e-75(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-32ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]