PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16878
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 115aa    MW: 12563.6 Da    PI: 8.2817
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16878genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.55.4e-3913101188
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                +C aCk+lrrkC++dC++apyf++eq p++fa++hk+FGasnv+kll ++p +er +a+ +++yeA+ar+rdPvyG+v++i++l
  Tp57577_TGAC_v2_mRNA16878  13 PCGACKFLRRKCVPDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFAL 96 
                                7*************************99******************************************************** PP

                     DUF260  84 qqqle 88 
                                qqq++
  Tp57577_TGAC_v2_mRNA16878  97 QQQVN 101
                                ***86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.18512114IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3713101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MASNGTSSGT GSPCGACKFL RRKCVPDCIF APYFCSEQGP ARFAAIHKVF GASNVSKLLL  60
HIPAHERCEA VVTIAYEAQA RIRDPVYGCV SHIFALQQQV NIPYYMPMFV YVNE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1423641e-134BT142364.1 Medicago truncatula clone JCVI-FLMt-14N17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449860.12e-67LOB domain protein
SwissprotQ9SLB71e-60LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A072U4552e-67A0A072U455_MEDTR; LOB domain protein
STRINGGLYMA03G31830.12e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.18e-62lateral organ boundaries-domain 16