PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA16867
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 123aa    MW: 13533.8 Da    PI: 8.6675
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA16867genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.11.2e-37898190
                     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
                               +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqq
  Tp57577_TGAC_v2_mRNA16867  8 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQ 93
                               7*************************89********************************************************** PP

                     DUF260 86 qleql 90
                               q++++
  Tp57577_TGAC_v2_mRNA16867 94 QVCSS 98
                               **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.3177111IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-35897IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MMTGSGSPCG ACKFLRRKCV RGCVFAPYFC HEQGATHFAA IHKVFGASNV SKLLAHLPVT  60
DRCEAAVTIS YEAQARLQDP IYGCVAHIFA LQQQVCSSLM MRITSNINKH ICIAENPRFF  120
FF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0921575e-92BT092157.1 Soybean clone JCVI-FLGm-10A4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449868.18e-66LOB domain protein
SwissprotQ9M2J72e-58LBD29_ARATH; LOB domain-containing protein 29
SwissprotQ9SLB66e-58LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A072U3H89e-66A0A072U3H8_MEDTR; LOB domain protein
STRINGGLYMA13G18210.14e-63(Glycine max)
STRINGGLYMA19G34600.13e-63(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-59lateral organ boundaries-domain 29