![]() |
Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA15924 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 114aa MW: 12513 Da PI: 4.2543 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 53.7 | 5.9e-17 | 2 | 53 | 49 | 100 |
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l el++++ee Tp57577_TGAC_v2_mRNA15924 2 VPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQIQSLLGELNVIREE 53 7899******************************************999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.742 | 1 | 54 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.5E-15 | 2 | 51 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 114 aa Download sequence Send to blast |
EVPENQRADA ANSLVYEANV RLRDPVYGCM GAISSLQQQI QSLLGELNVI REEIHKYKLM 60 EANMIPSSED LSIASSTLPS TTSLPMLPSS IYTQQTNPTN YSSISSDHIS YFD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CR938710 | 1e-131 | CR938710.1 Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616758.1 | 3e-69 | LOB domain protein | ||||
Swissprot | Q9AT61 | 2e-25 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | G7KH28 | 3e-69 | G7KH28_MEDTR; LOB domain protein | ||||
STRING | GLYMA06G15050.1 | 9e-40 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-21 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA15924 |