PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1519
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 226aa    MW: 24397.9 Da    PI: 8.4886
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1519genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.61.4e-2641081100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+vlr++C+++C++ p++     +++q +++ +++k++G++ +l+ll+++p+++ e++++sl+yeA  r+ +P yGa+g++
  Tp57577_TGAC_v2_mRNA1519   4 SCNGCRVLRKGCSEGCIIKPCLewissAQAQGHATLFLAKFYGRTGLLNLLANAPNQNAEAVFKSLLYEAAGRLVNPTYGALGLF 88 
                               6*********************9998777889***************************************************** PP

                    DUF260  81 lklqqqleqlkaelallkee 100
                               +++q+  +++++e +l++++
  Tp57577_TGAC_v2_mRNA1519  89 WTGQWSRCEAAVESVLTRSN 108
                               ************99998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.853109IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-224105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MKLSCNGCRV LRKGCSEGCI IKPCLEWISS AQAQGHATLF LAKFYGRTGL LNLLANAPNQ  60
NAEAVFKSLL YEAAGRLVNP TYGALGLFWT GQWSRCEAAV ESVLTRSNIN DVIAVDGQTS  120
SGTLIAENHV LPTNSDIRHV ARGTNVDIKE KTQFKRAGSI FKPKPRIGLA NNATLLKSIL  180
ENDIVTTVET SSMIEKELNE AAETQVNLEL TLGFNCQSSN GKKII*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470179.11e-117LOB domain protein
SwissprotQ9ZW961e-51LBD40_ARATH; LOB domain-containing protein 40
TrEMBLG7ZZB81e-117G7ZZB8_MEDTR; LOB domain protein
STRINGGLYMA20G24950.12e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14785614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.12e-46LOB domain-containing protein 40