PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15073
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 532aa    MW: 59698.6 Da    PI: 6.892
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15073genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-17175224155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Tp57577_TGAC_v2_mRNA15073 175 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 224
                                78*******************......55************************997 PP

2AP242.81.3e-13267317155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Tp57577_TGAC_v2_mRNA15073 267 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 317
                                89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-16175233IPR016177DNA-binding domain
PfamPF008476.3E-9175224IPR001471AP2/ERF domain
SMARTSM003807.9E-32176238IPR001471AP2/ERF domain
PROSITE profilePS5103217.596176232IPR001471AP2/ERF domain
CDDcd000182.31E-11176233No hitNo description
Gene3DG3DSA:3.30.730.106.0E-17176232IPR001471AP2/ERF domain
CDDcd000181.04E-25267327No hitNo description
PfamPF008473.5E-9267317IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-17267327IPR016177DNA-binding domain
SMARTSM003802.4E-32268331IPR001471AP2/ERF domain
PROSITE profilePS5103215.475268325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-16268325IPR001471AP2/ERF domain
PRINTSPR003675.2E-6269280IPR001471AP2/ERF domain
PRINTSPR003675.2E-6307327IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MWDLNGSPFK RKEEESERCS KTSIEGDDEK GKRVGGSISN SSSSAIVIEE DSEEDQQEQE  60
HKNRTMLMKK RNSKIFGFSV TQDEEQEQEE EEEDSLDSEN FPVTRNFFPM DQESDNIMVI  120
ENGTTSSSSA TFPRAHWVGV KFCQSETLGN GKSLEVSSSS QPMKKSRRGP RSRSSQYRGV  180
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVEADIN FNIEDYEEDL  240
KQMSNLTKEE FVHVLRRQST GFPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT  300
EVEAARAYDK AAIKCNGKEA VTNFDPSIYD SELNSAEPAI NVGGDHNLDL SLGNSTSKSM  360
NNAQTYGNHI SNVANHASDQ SNWHNGGNIN KPKLVNILPK PYNRPNNMEA YGRDLHGENE  420
ALRMLSQTHL HSSSSNEMLR YGPFRDHSQM LHSFPHTHPP TNFHFPSSSY GGRVGSDLSL  480
STSNQQQWQS GPHYLATAAA ASSGFPPQIR PSSSSQAWLH KNGFHTLMRP S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457433.10.0AP2 domain transcription factor
SwissprotP479271e-125AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A072UNS00.0A0A072UNS0_MEDTR; AP2 domain transcription factor
STRINGGLYMA17G18640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-120AP2 family protein