PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14992
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 120aa    MW: 13890.6 Da    PI: 10.2377
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14992genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.61.5e-134197155
                        AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                               s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Tp57577_TGAC_v2_mRNA14992 41 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 97
                               57*******************99998898888888********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-1641106IPR016177DNA-binding domain
PfamPF008471.2E-94197IPR001471AP2/ERF domain
PROSITE profilePS5103218.86142105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-1442105IPR001471AP2/ERF domain
SMARTSM003801.5E-1742111IPR001471AP2/ERF domain
PRINTSPR003674.0E-64354IPR001471AP2/ERF domain
PRINTSPR003674.0E-687107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAKLSKQQTQ KNNNANSSVN NTKVKRTRRS VPRDSPIQRS SIYRGVTRHR WTGRYEAHLW  60
DKNCWNESQN KKGRQGAYDD EEAAAHAYDL AALKYWGPDT ILNFPVIILA IIFMEINYY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308422.14e-59hypothetical protein POPTR_0006s19360g
SwissprotQ6X5Y62e-37WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLB9HBF54e-59B9HBF5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s19360.11e-58(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-32ARIA-interacting double AP2 domain protein