PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14953
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Dof
Protein Properties Length: 260aa    MW: 28434.4 Da    PI: 8.0187
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14953genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof39.41.3e-1226503862
                     zf-Dof 38 ryWtkGGalrnvPvGggrrknkkss 62
                               ryWt+GGalrnvPvGgg+r+n+k++
  Tp57577_TGAC_v2_mRNA14953 26 RYWTRGGALRNVPVGGGCRRNNKKN 50
                               9*******************98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-42643IPR003851Zinc finger, Dof-type
PfamPF027011.8E-72648IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAICMHQERC YIDPLLEKET VGCEGRYWTR GGALRNVPVG GGCRRNNKKN KRSRSKSPNS  60
TNSHEKQTSS SSAIASHHEL IGHQLPQTIT NLPFMASMQN HLSRFVVGNV NMGLGLREIQ  120
EQQQQQQQQT DQMGFQIGVG NGNGNSLVTV SAAVAGGGVG VDQWRNLQQF PFLNTFESNS  180
GGNNSFPFQG ESIEATSSGF VGDIASNPRV VNQEQPPLKM EENRSLNLSR TSLGVSEHNN  240
QQQFYSWNDL SGSSTTHLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456108.11e-112Dof domain zinc finger protein
TrEMBLA0A072UK581e-112A0A072UK58_MEDTR; Dof domain zinc finger protein
STRINGGLYMA12G06880.21e-64(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28810.24e-07Dof family protein