PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14571
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 206aa    MW: 23373.3 Da    PI: 9.6155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14571genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-1858108255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+eeA  a+++a+ k++g
  Tp57577_TGAC_v2_mRNA14571  58 RYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYVTEEEAGLAYDKAAFKMRG 108
                                8********.***********9998..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.79E-3057118No hitNo description
SMARTSM003801.0E-3558122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3158117IPR001471AP2/ERF domain
PROSITE profilePS5103223.90758116IPR001471AP2/ERF domain
PfamPF008472.6E-1358108IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-2258117IPR016177DNA-binding domain
PRINTSPR003671.6E-135970IPR001471AP2/ERF domain
PRINTSPR003671.6E-1398118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MFSPTKDSEL TYLEHIQQYL LHDDSNILTS HQQIQSPNNN SNITASAREV HAPPTWKRYR  60
GVRRRPWGKF AAEIRDPKKN GARVWLGTYV TEEEAGLAYD KAAFKMRGRK AKLNFPHLIG  120
SDVFTEPKME VTLKRESPEP SSSSEDSCES SSQGSKRKRG MVNLLNKLAK NRSQAMVVEN  180
KMASQANDVE QWVNELNDFS LIWCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2857116160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2857121468ATERF1
3gcc_A1e-2857121468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14571
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449424.11e-110ethylene-responsive transcription factor 1
SwissprotQ404791e-39ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A2K3LMS21e-151A0A2K3LMS2_TRIPR; Ethylene-responsive transcription factor 2-like protein
STRINGXP_004493050.11e-103(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-36ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]