PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13516
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 651aa    MW: 73080.9 Da    PI: 6.6503
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13516genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.6e-11285341155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+++GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Tp57577_TGAC_v2_mRNA13516 285 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDLEEKAARAYDLAALKYWG 341
                                789******************77776664346655.77***9**************98 PP

2AP2414.8e-13400449355
                        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GV+++++ grW A+I  +     ++  +lg+f t eeAa+ ++ a+ k++g
  Tp57577_TGAC_v2_mRNA13516 400 YRGVTRHHQHGRWQARIGRVAG---NRDLYLGTFSTQEEAAESYDVAAIKFRG 449
                                9***************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-18285349No hitNo description
SuperFamilySSF541711.11E-13285350IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.4E-12286350IPR001471AP2/ERF domain
PROSITE profilePS5103216.911286349IPR001471AP2/ERF domain
PfamPF008477.2E-9286341IPR001471AP2/ERF domain
SMARTSM003809.6E-21286355IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-16398459IPR016177DNA-binding domain
CDDcd000184.17E-24398459No hitNo description
Gene3DG3DSA:3.30.730.101.8E-17399458IPR001471AP2/ERF domain
SMARTSM003805.9E-32399463IPR001471AP2/ERF domain
PROSITE profilePS5103218.953399457IPR001471AP2/ERF domain
PfamPF008478.2E-9400449IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MMNDSNTSDD GNNHNWLGFS LSPYQMGEIT SESDLSHNPN NHHHYYHHDN QVSSSAVVPS  60
NFYMSPSMCY GVGQNSNSFH SSLSMMPLNS DGSLCIMEEA LTRSQSHVMM PPKLEDFLGG  120
ATMETHHEYE GHERETMALS LDSIYYNNNV EQQDHSSYYS ELACHGMYQQ APLLEQEENK  180
EDNIFCFKNF VAPRDYSLEQ HHHQVNNNVV DDGSVGTVNG CGELQSLTLS MSPGSQSSCV  240
TVPTQISSSG NDSMVVEAKK RGNGKVGKKQ PVHRKSIDTF GQRTSQFRGV TRHRWTGRYE  300
AHLWDNSCKK EGQTRKGRQG GYDLEEKAAR AYDLAALKYW GPSTHINFPL EKYQIELEEM  360
NNMNRQEYVA HLRRYRHWLT FFFLLVCRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA  420
GNRDLYLGTF STQEEAAESY DVAAIKFRGL NAVTNFDMSK YNVEKIMASN TLLVGEHARR  480
TTKKIKDCEE PKPEAKECNN NVVVTNQITN GEEIEAVNNN ETNNWNQSPQ QESNTCDQKT  540
VKFGNFSMSL QDIIGIDSVG GSSQVLVDDD STNKMKRTHF SNSSSLVTSL SSSRECSPDN  600
KSTGPTMLFP KPPIGSKNLS PIVTNVGSWF PSSSTISMPH FPVFAAWSDA *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465957.10.0AP2-like ethylene-responsive transcription factor
SwissprotQ389141e-143ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A072VEY00.0A0A072VEY0_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGGLYMA04G05080.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-143AP2 family protein