PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12016
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 129aa    MW: 14285.2 Da    PI: 11.4265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12016genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-204291255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a+++a+ +++g
  Tp57577_TGAC_v2_mRNA12016 42 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDRAAFQFRG 91
                               69*******.**********8...557***********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-324199No hitNo description
SuperFamilySSF541713.33E-2342101IPR016177DNA-binding domain
PfamPF008471.2E-144291IPR001471AP2/ERF domain
PROSITE profilePS5103223.964299IPR001471AP2/ERF domain
SMARTSM003803.7E-3942105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-324299IPR001471AP2/ERF domain
PRINTSPR003672.0E-114354IPR001471AP2/ERF domain
PRINTSPR003672.0E-116581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MDNPHSTYVT ININMAPKVK SGGVKVNANG NININGGVKE AHFRGVRKRP WGRYAAEIRD  60
PGKKSRVWLG TFDTAEEAAR AYDRAAFQFR GLKAKTNFPF NNIQSXXXXX LNLPAVTVTL  120
PPILRRLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2438100164ATERF1
3gcc_A4e-2438100164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12016
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1551575e-58AC155157.1 Medicago truncatula chromosome 2 BAC clone mth2-53f22, complete sequence.
GenBankBT1379675e-58BT137967.1 Medicago truncatula clone JCVI-FLMt-2J8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485813.12e-41ethylene-responsive transcription factor 4
SwissprotQ9LW498e-36ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A2K3LPR81e-67A0A2K3LPR8_TRIPR; Ethylene-responsive transcription factor 4-like protein
STRINGXP_004485813.17e-41(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-26erf domain protein 9