PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10039
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 301aa    MW: 32760.8 Da    PI: 7.3654
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10039genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.81.3e-314107199
                     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+
  Tp57577_TGAC_v2_mRNA10039   4 SCNGCRVLRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGL 87 
                                6*********************************************************************************** PP

                     DUF260  80 ilklqqqleqlkaelallke 99 
                                ++++++ql+q+++e++l ++
  Tp57577_TGAC_v2_mRNA10039  88 LWSGSWQLCQAAVEAVLKGA 107
                                **************998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.7E-991296IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.9833109IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLVNAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PITSEAAANG  120
RGPPLKAYDI RHVSKDENSA ASNELTQQRV KTRSRKRSNL AKPKETTDEE KSSNDNKGVE  180
SGSVEPVEEV MNGSGSHESS ISHQSEAVNA AAVDGESKES ESETSMILFR DEPEKESNRN  240
LKRSDRTSES GEENVGLELT LGLEPVSRVY HVVPVKKRRV ELKDCGGGSW NVELGLQYPA  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1431550.0BT143155.1 Medicago truncatula clone JCVI-FLMt-7I21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568012.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-111LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A072TVI90.0A0A072TVI9_MEDTR; Seed specific protein Bn15D17A
STRINGGLYMA18G53440.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-104LOB domain-containing protein 41