PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0779_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 298aa    MW: 33548.8 Da    PI: 6.7177
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0779_001genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.28.7e-081232042
                   HHHHHHHHHHHHT-EEEEEEE-T CS
         SRF-TF 20 ilKKAeELSvLCdaevaviifss 42
                   ++KK +ELS+LC++ ++ i++s+
  Tp_un0779_001  1 MMKKVKELSTLCGITACAILYSP 23
                   59*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003191.3E-5124IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-11168IPR002100Transcription factor, MADS-box
CDDcd002668.41E-18158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMKKVKELST LCGITACAIL YSPYDSNPEV WPSTAGVRRV ISEFHALPEV EQRKKMLDQQ  60
TFLRQRIAKA SDHLKRHIKE NRELEMTEVM FQCLLGNMRM FDLNIIDFND LGYLIEQRVK  120
DLNRRISILE NSGTEIGESS NYATAATPSK GIGSLAVVAA TTAPATMFHE VGSSSSSAAG  180
TTFFNPIHDQ QYFQQFRHQA VSHVGLYEQP GNLNCSHQQQ RFMETMNHPE GMSYAAEHMR  240
FPFMDGNHHH YHHNQPQQQM HIPGDSSTAP TVVSSSSLIP TTSSCLTDNV WFPQDLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199678.11e-107AGAMOUS-like 80
SwissprotQ9FJK31e-108AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A178UE431e-106A0A178UE43_ARATH; FEM111
STRINGAT5G48670.11e-106(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-91AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]