PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0049_007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 265aa    MW: 30272.5 Da    PI: 9.5633
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0049_007genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-0598120223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +C+ C+++++++ +L  Hi+  H
  Tp_un0049_007  98 SCSVCSRVYPTSRLLSIHISEaH 120
                    6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.117095IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807295IPR007087Zinc finger, C2H2
SMARTSM00355597120IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099120IPR007087Zinc finger, C2H2
SMARTSM003550.4135160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAMGMAVDTV GELVFPYWTP LRRKFPPDSP FFASGNVERE LLAKQVALDL TEDEINNLQK  60
IVETESSRRI SCPIVGCPER LKSLENFEDH YKARHTASCS VCSRVYPTSR LLSIHISEAH  120
DSFFQAKVAR GYDMYECLVE GCGLKFKKYK ARHRHLVDKH KFPTTFEFFK KTQLSKKRRE  180
KLQRQRVSKL KHEEDKEEAL SDAMEVEDKV NLDGLVSALS TLTTSDTTPS NVSFGRRHGR  240
GLNFVPRSVR REERTKSSSA PGPTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180KKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937480.0AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453529.11e-179PREDICTED: zinc finger protein 511 isoform X1
TrEMBLA0A178UDE41e-174A0A178UDE4_ARATH; Uncharacterized protein
TrEMBLQ0WRF41e-174Q0WRF4_ARATH; Nucleic acid binding / zinc ion binding protein
TrEMBLQ84WK11e-174Q84WK1_ARATH; At5g14140
STRINGXP_010453529.11e-178(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-154zinc ion binding;nucleic acid binding;zinc ion binding