PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0036_004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 606aa    MW: 66696.9 Da    PI: 4.7098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0036_004genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12431476454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Tp_un0036_004 431 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 476
                    799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.8E-5551236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.282427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-18430496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.86E-15430481No hitNo description
Gene3DG3DSA:4.10.280.104.5E-18431495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10431476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-17433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MNDYFLNQST ATDDNASAAM EAFIGTNHST IWPQPSLPPP PPLSQFNEDT LQQRLQALIE  60
SAGESWTYAI FWQISHDFDS PTGENTVVLG WGDGYYKGEE DKEKKKKSST SNAAEQEHRK  120
RVIRELNSLI SGGIGVSDES NDEEVTDTEW FFLVSMTQSF ANGVGLPGES FLNSRVIWLS  180
GSGALTGSGC ERAGQGQIYG LQTMVCIAAE NGVVELGSSE LINQSSDLMD KVNNLFNFDN  240
GNGGEACSWG INLNPDQGEN DPAMWISEPM TTGIEPGQVT PAINNSNSNS SSKSDTHQIS  300
KLEKNESSIE NPRQQQNPSL VERDLNFSSS GLNQNGNFQD GSSRMMMKSN ETLSFMAEES  360
NKRRSPVSKG SNNDEAMLSF STVVRSAPKS GDSDHSDLEA SVVKEAIVVE PEKKPRKRGR  420
KPANGREEPL NHVEAERQRR EKLNQRFYSL RAVVPNVSKM DKASLLGDAI SYINELKSKL  480
QQAESDKEEI QKQLDGMSKE GNGKGGVSRA KERKCSNQDS ASSIEMEIDV KIIGWDVMIR  540
VQCSKKNHPG ARFMEALKEL DLEVNHASLS VVNDLMIQQA TVKMGSQFFN HDQLKAVLVS  600
KVGEEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-11962324227Transcription factor MYC3
4ywc_A1e-11962324227Transcription factor MYC3
4ywc_B1e-11962324227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412420KKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00085PBMTransfer from AT5G46760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527070.0AK352707.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-E20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398371.10.0hypothetical protein EUTSA_v10000808mg
SwissprotQ9FIP90.0MYC3_ARATH; Transcription factor MYC3
TrEMBLE4MW100.0E4MW10_EUTHA; mRNA, clone: RTFL01-05-E20
STRINGBra024998.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.10.0bHLH family protein