PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0010_011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 625aa    MW: 69124 Da    PI: 6.054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0010_011genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.2e-13438485355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    ++h   E++RR+++N++f  Lr+++P+ +      K +K++iL  ++eY+++L+
  Tp_un0010_011 438 ANHAVLEKKRREKLNERFMILRSIIPSiN------KIDKVSILDDTIEYLQELE 485
                    5899***********************77......****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-5214206IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.412435484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17437501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-11438485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-17439497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-14439489No hitNo description
SMARTSM003535.9E-15441490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MVTGQNRTSV PENLKKKLAV SIRSIQWSYA IFWSLSSSHS GVLEWGDGYY NGDIKTRKTI  60
QASEIKADQL GLRRSEQLRE LYESLSVAES STSGTAAGSQ VTRRASAAAL SPEDLADTEW  120
YYLVCMSFVF KIGEGMPGRA FTNAEPIWLC NAHTADSKVF SRSLLAKSAS VNTVICFPFL  180
GGVIEIGTTE HVAEDMNVIQ CMKKSFLEAP DPYATILQPR SDYHIDNVFD PQQILGDEIY  240
APMFGTEPFL ATSPSRTTNG FDLEHEQVAE DHDSFMAEGV SSQIQSWQLM DEDLSNCVHQ  300
SFNSSDCVSQ TFVEAAGGRV SGSARKGRAQ RLGHTQEQQK NVKILSLDPG NDDVHYQGVI  360
STIFKTNHQL ILGPQFRNCD KQSSFTRWKK PSSSSSSGTV AVVPSSQGML KKIIFEVPRV  420
IQKEKLLLDS VGVGDETANH AVLEKKRREK LNERFMILRS IIPSINKIDK VSILDDTIEY  480
LQELERRVQE LESTGTETHG TMTMKRKKPY DAGERTSANC TNNETGNGKR VQVGEAEPAE  540
TGLTDNLRIG SVGNEVVIEL RCAWREGVLL EIMDVISDLN LDSHSVQSST GDGLLCLTIS  600
CKHKGSKIAT PRMIKEALQK VAWIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-16122067192Transcription factor MYC3
4rqw_B5e-16122067192Transcription factor MYC3
4rs9_A5e-16122067192Transcription factor MYC3
4yz6_A5e-16122067192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444449KKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140081.10.0PREDICTED: transcription factor GLABRA 3 isoform X1
RefseqXP_009140082.10.0PREDICTED: transcription factor GLABRA 3 isoform X2
SwissprotQ9FN690.0GL3_ARATH; Transcription factor GLABRA 3
TrEMBLM4E9Q20.0M4E9Q2_BRARP; Uncharacterized protein
STRINGBra025508.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.10.0bHLH family protein