PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0006_003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GeBP
Protein Properties Length: 256aa    MW: 29326 Da    PI: 5.316
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0006_003genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57397.41.3e-3080174298
         DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                    +fqrlwseeD++v+L G+++fk ktgk   +d+++fye vk+si f+ ++ s l++Kir LK+K+ +k+k+   g  ps++k+ d+k+fels  +W
  Tp_un0006_003  80 YFQRLWSEEDDLVILNGMLKFKIKTGKTHNEDMHGFYESVKNSITFEGKNlSRLTNKIRTLKQKYMTKKKN---GVTPSVTKAYDHKCFELSDLVW 172
                    89********************************************9765489*************99999...********************** PP

         DUF573  97 gs 98 
                    gs
  Tp_un0006_003 173 GS 174
                    95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.4E-2481173IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTKKHDQPLQ DPPTASLSEE ETSGSSSEEE EGEEPETDSE SEPETTESPA ADSASLKKTK  60
KRPRYEKEAT TTETATKKSY FQRLWSEEDD LVILNGMLKF KIKTGKTHNE DMHGFYESVK  120
NSITFEGKNL SRLTNKIRTL KQKYMTKKKN GVTPSVTKAY DHKCFELSDL VWGSEVESPI  180
SEGGMVYETD WFMTFSLRGH IASFGIDEEH VKQKWSLLPV ETKTKLRNKW KMLEGEAVEV  240
LVQKIEFMHE VIPLFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15562LKKTKKRP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01370.12e-41DNA-binding storekeeper protein-related transcriptional regulator