PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g27740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 265aa    MW: 30678.6 Da    PI: 4.593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g27740genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-115799754
               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 Er+RR+++N++++ Lr+++P+ +      Kl+Ka++ +  ++Y+++L
  Tp7g27740 57 VSERNRRQKLNQRLFALRSVVPNiS------KLDKASVIKDSIDYMQEL 99
               57*********************66......***************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9295099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.25E-105499No hitNo description
SuperFamilySSF474592.75E-1654120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1256105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1656119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-95799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEDLDDEYKN YWETTMFFQN QEFEFDSWPL EEAFSGSGEW SSPDGAATSP ASAKNVVSER  60
NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI DQEKRLEAEI RELESQSTLL  120
ENPTKDYDCI KNFLENQQQN LSDINLIMRS KKFRHMDYNT FGSSIPKVHN NHSLIEVLEM  180
KVTWMGEKTV VVCITCSKRR ETMLQLCKVL ESLNLNILTT NFSCFSSRLS TTLFLQADED  240
ERTTVETKIQ TAIAAYNDPS CLIDF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0058691e-133BT005869.1 Arabidopsis thaliana At4g29930 gene, complete cds.
GenBankAK2282011e-133AK228201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL14-65-D05.
GenBankAK1762761e-133AK176276.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-19-M11.
GenBankAK1762011e-133AK176201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-07-N06.
GenBankAK1177301e-133AK117730.1 Arabidopsis thaliana At4g29930 mRNA for putative bHLH transcription factor (bHLH027), complete cds, clone: RAFL17-41-A21.
GenBankAJ6304821e-133AJ630482.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g29930.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586354.11e-163PREDICTED: transcription factor bHLH27-like isoform X2
RefseqXP_013713950.11e-163PREDICTED: transcription factor bHLH27-like isoform X2
SwissprotQ700E31e-136BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A078C0F81e-163A0A078C0F8_BRANA; BnaC01g08450D protein
TrEMBLA0A0D3A3991e-163A0A0D3A399_BRAOL; Uncharacterized protein
STRINGfgenesh2_kg.7__1196__AT4G29930.11e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-156bHLH family protein