PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g21470
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 304aa    MW: 33968.8 Da    PI: 8.7885
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g21470genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30136194259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ver+ ++p+ ++itY++eHnhe
  Tp7g21470 136 SDAWAWRKYGQKPIKGSPHPRSYYRCSSSkGCLARKQVERNPQNPEKFTITYTNEHNHE 194
                7**************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-31121196IPR003657WRKY domain
PROSITE profilePS5081132.753130196IPR003657WRKY domain
SuperFamilySSF1182903.66E-26130196IPR003657WRKY domain
SMARTSM007742.3E-36135195IPR003657WRKY domain
PfamPF031061.1E-25137194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGEVAYMDEG DLEAIVRGYS GSGESSGGFS PSFCLPFETA SFYEPDSETT GLDELGELYK  60
PFYPFSTQTI LTSSVSVPED SSRSFRSDKK QRTHGCLLSN GSKVGHIRVP ESKSKKSKKN  120
QQKRVVEQVK EENLLSDAWA WRKYGQKPIK GSPHPRSYYR CSSSKGCLAR KQVERNPQNP  180
EKFTITYTNE HNHELPTRRN SLAGSTRAKS SQPKPFITKK TGKQMVSSPT SNRMITSADE  240
SSVAVHDMRV AEMSTYQTTR EIEGTSSKLP SDLLSGTGNF PVFTGDFDEL LVSQEFLNGY  300
LWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-20126196877Probable WRKY transcription factor 4
2lex_A5e-20126196877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9124000.0EU912400.1 Brassica napus WRKY29-1 transcription factor (WRKY29-1) mRNA, complete cds.
GenBankKF4300460.0KF430046.1 Brassica rapa WRKY transcription factor 29 (WRKY29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439158.10.0PREDICTED: probable WRKY transcription factor 29
SwissprotQ9SUS11e-179WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBLV4LWJ30.0V4LWJ3_EUTSA; Uncharacterized protein
STRINGBra020814.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60902545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.11e-159WRKY family protein