PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g12480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 166aa    MW: 19142 Da    PI: 9.1013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g12480genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-101764454
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               ++  rEr RR+++N++f  L ++l +    + +K +K +iL  A++ +++L
  Tp7g12480 17 TKACRERLRREKLNERFMDLSSVLEPG---RTPKTDKPAILDDAIRVLNQL 64
               5678**********************8...8*****************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.6971364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.44E-71767No hitNo description
PfamPF000107.3E-81764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-101970IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-131986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-112186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MVVDRGRTGS CIRPGGTKAC RERLRREKLN ERFMDLSSVL EPGRTPKTDK PAILDDAIRV  60
LNQLRDEAHE LEETNQKLLD EIKSLKAEKN ELREEKLALK TEKEKTEQQL KSMMVPSSGF  120
MPQIPAPFNQ NKMAVYPSYG YMPMWHYLPQ SVRDTSRDQE LRPPAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532960.0AK353296.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-C06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013742814.11e-113PREDICTED: transcription factor bHLH104-like isoform X2
RefseqXP_013742813.11e-113PREDICTED: transcription factor bHLH104-like isoform X1
SwissprotQ8L4671e-105BH104_ARATH; Transcription factor bHLH104
TrEMBLA0A078FEH21e-112A0A078FEH2_BRANA; BnaC04g28710D protein
TrEMBLA0A078IEU21e-112A0A078IEU2_BRANA; BnaCnng17300D protein
TrEMBLA0A0D3BYN91e-112A0A0D3BYN9_BRAOL; Uncharacterized protein
STRINGBra041033.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40262653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.25e-80bHLH family protein