PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g36630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 290aa    MW: 32355.8 Da    PI: 6.852
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g36630genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3105.72.3e-3344156199
                EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                f+k ltpsdv+k++rlv+pk++ae++              ++++e+++ l++ed sg+ W+++++y+++s++yvltkGW++Fvk+++L+ gD+v F++++
  Tp6g36630  44 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnaisnnadtssSSSSEKGMLLSFEDDSGKCWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRQR 143
                99********************************999999777789***************************************************998 PP

                SSEE..EEEEE-S CS
         B3  87 rsefelvvkvfrk 99 
                +++++l+++++r+
  Tp6g36630 144 SDSRRLFIGWRRR 156
                89999******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-4138162IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-3039156IPR015300DNA-binding pseudobarrel domain
CDDcd100174.44E-2843147No hitNo description
SMARTSM010192.4E-2644157IPR003340B3 DNA binding domain
PfamPF023628.6E-3144156IPR003340B3 DNA binding domain
PROSITE profilePS5086314.01544157IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSVNHYSTDH HHTLLWQHLN TIDTSGTTTA AAAWLNEDQK ESLFEKSLTP SDVGKLNRLV  60
IPKQHAEKYF PLNAISNNAD TSSSSSSEKG MLLSFEDDSG KCWRFRYSYW NSSQSYVLTK  120
GWSRFVKDKQ LDPGDVVFFQ RQRSDSRRLF IGWRRRGQGS SSVAGNPTSY SSSMAAPPYL  180
QIPAAFSNYS NPPTHSEYSH YGAAVATASE TTHSIPSSSA VGSSRTVRLF GVNLECQMEE  240
DDGDDSVAAV AAVECPDGYY GQNMCYYYTP PHPYNMVLKT ILPYAKVIYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-484116911129DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680962.11e-156PREDICTED: B3 domain-containing protein At5g06250-like isoform X2
SwissprotQ9FNI31e-140Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A0D3EHF21e-154A0A0D3EHF2_BRAOL; Uncharacterized protein
STRINGBra005886.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-130B3 family protein