PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g30900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 147aa    MW: 17051.2 Da    PI: 9.9897
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g30900genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.1e-3268126159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK vk+++fprsYYrCt+ gC+vkk+v+r + d++vv++tYeg H h+
  Tp6g30900  68 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVVVTTYEGVHSHP 126
                59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-3353126IPR003657WRKY domain
SuperFamilySSF1182907.19E-2960127IPR003657WRKY domain
PROSITE profilePS5081129.76963128IPR003657WRKY domain
SMARTSM007741.9E-3768127IPR003657WRKY domain
PfamPF031063.1E-2669126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEGYGNGSLY APFLSLKPHQ SLSKSGFHQG EEEASKVREG SSRSLELKKK KVKKERFAFQ  60
TRSQVDILDD GYRWRKYGQK AVKNNKFPRS YYRCTYGGCN VKKQVQRLTV DQEVVVTTYE  120
GVHSHPIEKS TENFEHILTQ MQIYSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-2958127776Probable WRKY transcription factor 4
2lex_A8e-2958127776Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527741e-160AK352774.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-I01.
GenBankKM5931621e-160KM593162.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY106) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626795.12e-93PREDICTED: probable WRKY transcription factor 75
RefseqXP_013674576.12e-93PREDICTED: probable WRKY transcription factor 75
SwissprotQ9FYA25e-85WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLA0A078C1492e-93A0A078C149_BRANA; BnaC03g05760D protein
TrEMBLA0A0D3B0W42e-93A0A0D3B0W4_BRAOL; Uncharacterized protein
STRINGBra006178.1-P6e-91(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.11e-85WRKY DNA-binding protein 75