PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g26290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 321aa    MW: 36972.2 Da    PI: 10.0111
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g26290genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.92.4e-2019111197
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ffk+l ++d +++ + ++p +f+++++ +  +s++++l+ ++g sW vk+  +k+++  y+   GW++Fv++ngL e++ ++F+++ +++f  +v ++
  Tp6g26290  19 FFKILRREDLSSEIMRMIPHDFIRSISDN-SSSFKMVLKVPWGSSWPVKI--SKNPSFhYMEDHGWNHFVSDNGLGENEYLTFTHEANMCF--NVNIY 111
                99************************766.589*****************..999999567779*********************999**9..66665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-1914115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-2015118IPR015300DNA-binding pseudobarrel domain
CDDcd100174.68E-1919111No hitNo description
SMARTSM010191.7E-2319114IPR003340B3 DNA binding domain
PfamPF023622.2E-1819111IPR003340B3 DNA binding domain
PROSITE profilePS5086313.50719114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-10214295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-12214295IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.614215308IPR003340B3 DNA binding domain
CDDcd100172.98E-7216292No hitNo description
SMARTSM010190.001218308IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVRNSGFGQI MEEGDNAGFF KILRREDLSS EIMRMIPHDF IRSISDNSSS FKMVLKVPWG  60
SSWPVKISKN PSFHYMEDHG WNHFVSDNGL GENEYLTFTH EANMCFNVNI YESDGKEMLR  120
PRESATIASS SGMNKREQRN GVYKNVKKEE IVSSSESSYP HLRKAESAGS RLKKKREPTL  180
GKKKAEQAEK SKKNKKKKKV DSACKDFEGS TSSLVPEFNL TIRKSHLLFL GIPKKFVDMH  240
MPKETKMFKI HPEGKESWKV LYLVTDAQSR FSAGWSRLAR ELDLVRHYGL LFNVRTDFMI  300
VLDLVSMEES DLSLSEHQKR N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181198KKKAEQAEKSKKNKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400343.11e-150hypothetical protein EUTSA_v10015705mg
SwissprotQ9FJG21e-130Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLV4N7Z11e-150V4N7Z1_EUTSA; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_60014991e-134(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-124VERDANDI