PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g26220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 306aa    MW: 34916.1 Da    PI: 9.6285
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g26220genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543e-1720110296
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                fkvl ++d +++ +  +p +f+++++ +   s++++l+ ++g sW +kl  +++++  y+ ++GW +F ++n L +++ ++F+++g+++f   v +
  Tp6g26220  20 FKVLRKEDLSSETMRGIPHDFMKSISAE-DFSFKMVLKLPWGSSWPIKL--SRNPRFyYMEKNGWDQFLSDNALGDNELLTFTHKGNMCF--SVNI 110
                899*******************999544.699*****************..****99555669***********************9*99..4444 PP

2B344.62.7e-142253001696
                EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                l +pkkfae h+ k  e ++ ++ +++g +sWevk+    ++ +  ++ GW + vk+ gLk gD+++F l++    e+v++v
  Tp6g26220 225 LGVPKKFAEMHMPK--EATMFKIHHSKGkKSWEVKY--VVSDIQSRFSPGWVRLVKDLGLKFGDVCTFVLIKP--NEMVLTV 300
                569********866..44578888877779******..666666679**********************9973..3334444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-1814114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-1815118IPR015300DNA-binding pseudobarrel domain
CDDcd100177.89E-1617111No hitNo description
PROSITE profilePS5086312.44919114IPR003340B3 DNA binding domain
PfamPF023622.3E-1519110IPR003340B3 DNA binding domain
SMARTSM010197.0E-2119114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-17210302IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.66210304IPR003340B3 DNA binding domain
CDDcd100172.80E-13211301No hitNo description
SuperFamilySSF1019364.51E-18211301IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.0E-17213304IPR003340B3 DNA binding domain
PfamPF023625.0E-11225297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAKNSCFGKI MEEGDKPGYF KVLRKEDLSS ETMRGIPHDF MKSISAEDFS FKMVLKLPWG  60
SSWPIKLSRN PRFYYMEKNG WDQFLSDNAL GDNELLTFTH KGNMCFSVNI YQIDCSEMLR  120
PKNSATIASS SRNKREHRNN VYKDVKEEER ESLSASSYPG SETAESTVGG RLKQKREFNL  180
GKKKLEEAEK SKKKMDTDCD DSEAGTSSLA PEFTLTIKKS YILFLGVPKK FAEMHMPKEA  240
TMFKIHHSKG KKSWEVKYVV SDIQSRFSPG WVRLVKDLGL KFGDVCTFVL IKPNEMVLTV  300
SKNGTP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680975.11e-162PREDICTED: B3 domain-containing protein At5g18000-like
SwissprotQ9FK611e-132Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLA0A078HJ491e-162A0A078HJ49_BRANA; BnaA10g16730D protein
STRINGBra002132.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-133B3 family protein