PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g22020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 219aa    MW: 25016.4 Da    PI: 9.1502
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g22020genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.73.1e-23450349
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                en+sn qvtfskRr g++KKA+EL++LCdae+a+++fs++++++ +
  Tp6g22020  4 MENESNLQVTFSKRRYGVFKKASELCTLCDAEIAIVVFSPSNTVFSF 50
               79*****************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-24153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.937154IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-23270IPR002100Transcription factor, MADS-box
PfamPF003199.4E-24350IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-101631IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-103152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAKMENESNL QVTFSKRRYG VFKKASELCT LCDAEIAIVV FSPSNTVFSF GHPNVKTVIN  60
LFLNNNHLPP NQQINMQLNN VRQNSIILDL NNHFIQVMNQ LESEKKKNDE LKKISKNSLR  120
HVKWWEEPIE GLDLAKAKEF KGNLENLKKI VTLEASKFFQ GTFPQQNFYV GSSSNGPFGV  180
DDGNNINPNL DLFNQRRLTD QNMVLPNHPL SFGNNNHAQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g22020
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013315.18e-96agamous-like MADS-box protein AGL62
SwissprotQ9FKK23e-95AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A178UGT89e-94A0A178UGT8_ARATH; AGL62
STRINGAT5G60440.11e-93(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-87AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]